MarineGEO-TMON Publications

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72. Lefcheck, B.W. Pfirmann, F.J. Fodrie, J.H. Grabowski, A.R. Hughes, A.R. Smyth. (2020) Consumption rates vary based on the presence and type of oyster structure: a seasonal and latitudinal comparison. Journal of Experimental Marine Biology and Ecology. https://doi.org/10.1016/j.jembe.2020.151501

71. Anker, A., & Grave, S. (2021) Opaepupu, a new genus and species of bivalve-associated shrimp (Decapoda: Caridea: Palaemonidae) from Hawai’i.  Zootaxa, 4903(1), 55–70. doi:http://dx.doi.org/10.11646/zootaxa.4903.1.3

70. Jonathan S. Lefcheck, Bruce W. Pfirrmann, F. Joel Fodrie, Jonathan H. Grabowski, A. Randall Hughes, Ashley R. Smyth, Consumption rates vary based on the presence and type of oyster structure: A seasonal and latitudinal comparison, Journal of Experimental Marine Biology and Ecology,Volume 536,2021,151501,ISSN 0022-0981,https://doi.org/10.1016/j.jembe.2020.151501

69. Dean S. Janiak, David Branson,Impacts of habitat and predation on epifaunal communities from seagrass beds and artificial structures, Marine Environmental Research, Volume 163, 2021,105225, ISSN 0141-1136, https://doi.org/10.1016/j.marenvres.2020.105225.

67. Archana, A., & Baker, D. M. (2020). Multifunctionality of an urbanized coastal marine ecosystem. Frontiers in Marine Science, doi:http://dx.doi.org/10.3389/fmars.2020.557145

66. Lucey N, Haskett E and Collin R (2020) Multi-stressor Extremes Found on a Tropical Coral Reef Impair Performance. Front. Mar. Sci. 7:588764. doi: 10.3389/fmars.2020.588764

64. Yang, B.; Hawthorne, T.L.; Hessing-Lewis, M.; Duffy, E.J.; Reshitnyk, L.Y.; Feinman, M.; Searson, H. Developing an Introductory UAV/Drone Mapping Training Program for Seagrass Monitoring and Research. Drones 2020, 4, 70.

63. Whalen, Matthew A., et al. Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences (2020) https://doi.org/10.1073/pnas.2005255117

62. Lambert G. The Ascidiacea collected during the 2017 British Columbia Hakai MarineGEO BioBlitz. Zootaxa. 2019 Aug;4657(3):zootaxa.4657.3.1. DOI: 10.11646/zootaxa.4657.3.1.

61.Murphy, C.E., Orth, R.J. & Lefcheck, J.S. Habitat Primarily Structures Seagrass Epifaunal Communities: a Regional-Scale Assessment in the Chesapeake Bay. Estuaries and Coasts 44, 442–452 (2021). https://doi.org/10.1007/s12237-020-00864-4 

60. R.J. Orth, J.S. Lefcheck, K.S. McGlathery, L. Aoki, M.L. Luckenbach, K.A. Moore, M.P.J. Oreska, R. Snyder, D.J. Wilcox, B. Luck. (2020) Restoration of seagrass habitat leads to rapid recovery of coastal ecosystem services. Science Advances

59. Radashevsky VI, Pankova VV, Malyar VV, Neretina TV, Choi JW, et al. (2020) Molecular analysis of Spiophanes bombyx complex (Annelida: Spionidae) with description of a new species. PLOS ONE 15(7): e0234238. https://doi.org/10.1371/journal.pone.0234238

58. Janiak DS, Freeman CJ, Seemann J, Campbell JE, Paul VJ, Duffy JE (2020) Spatial variation in the effects of predator exclusion on epifaunal community development in seagrass beds. Mar Ecol Prog Ser 649:21-33. https://doi.org/10.3354/meps13449

57. Whalen MA, Millard-Martin BR, Cox KD, Lemay MA, Paulay G (2020) Poleward range expansion of invasive bopyrid isopod, Orthione griffenis Markham, 2004, confirmed by establishment in Central British Columbia, Canada. BioInvasions Records 9(3): 538– 548, https://doi.org/10.3391/bir.2020.9.3.09

56. Monteiro, J.G., Jiménez, J.L., Gizzi, F. et al. Novel approach to enhance coastal habitat and biotope mapping with drone aerial imagery analysis. Sci Rep 11, 574 (2021). https://doi.org/10.1038/s41598-020-80612-7 

55. Susanne Schäfer, João Monteiro, Nuno Castro, Francesca Gizzi, Filipe Henriques, Patrício Ramalhosa, Manuela Isabel Parente, Gil Rilov, Ignacio Gestoso, João Canning-Clode, Lost and found: A new hope for the seagrass Cymodocea nodosa in the marine ecosystem of a subtropical Atlantic Island, Regional Studies in Marine Science, Volume 41, 2021,101575,ISSN 23524855,https://doi.org/10.1016/j.rsma.2020.101575 

52. Freeman, C. J., Easson, C. G., Matterson, K. O., Thacker, R. W., Baker, D. M., & Paul, V. J. (2020). Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association. The ISME Journal, 1-13.  

51.Parenti, L., Pitassy, D., Jaafar, Z., Vinnikov, K., Redmond, N., & Cole, K. (2020). Fishes collected during the 2017 MarineGEO assessment of Kāne‘ohe Bay, O‘ahu, Hawai‘i. Journal of the Marine Biological Association of the United Kingdom, 1-31. doi:10.1017/S0025315420000417 

50. Chernyshev AV, Polyakova NE, Vignesh MS, et al. A histology-free description of a new species of the genus Tetrastemma (Nemertea: Hoplonemertea: Monostilifera) from Hawaii and India. Zootaxa. 2020 Jul;4808(2):zootaxa.4808.2.10. DOI: 10.11646/zootaxa.4808.2.10 

49. Brandl, S. J., Casey, J. M., & Meyer, C. P. (2020). Dietary and habitat niche partitioning in congeneric cryptobenthic reef fish species. Coral Reefs, 1-13.  

48. Wang, A., Conti-Jerpe, I. E., Richards, J. L., & Baker, D. M. (2020). Phestilla subodiosus sp. nov.(Nudibranchia, Trinchesiidae), a corallivorous pest species in the aquarium trade. ZooKeys, 909, 1. 

47. Lohan, K. M. P., DiMaria, R., Martin, D. L., Ross, C., & Ruiz, G. M. (2020). Diversity and microhabitat associations of Labyrinthula spp. in the Indian River Lagoon System. Diseases of Aquatic Organisms, 137(2), 145-157.  

46. Cramer, K. L., O'Dea, A., Leonard‐Pingel, J. S., & Norris, R. D. (2019). Millennial‐scale change in the structure of a Caribbean reef ecosystem and the role of human and natural disturbance. Ecography  

44. Gizzi, F., Jiménez, J., Schäfer, S., Castro, N., Costa, S., Lourenço, S., José, R., Canning-Clode, J., & Monteiro, J. (2020). Before and after a disease outbreak: Tracking a keystone species recovery from a mass mortality event. Marine environmental research, 156, 104905  

43. Chen, J., McIlroy, S. E., Archana, A., Baker, D. M., & Panagiotou, G. (2019). A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Microbiome, 7(1), 104.  

42. Cacabelos, E., Gestoso, I., Ramalhosa, P., Riera, L., Neto, A. I., & Canning-Clode, J. (2019). Intertidal assemblages across boulders and rocky platforms: a multi-scaled approach in a subtropical island. Marine Biodiversity, 1-15.  

40. Schäfer, S., Monteiro, J., Castro, N., Rilov, G., & Canning-Clode, J. (2019). Cronius ruber (Lamarck, 1818) arrives to Madeira Island: a new indication of the ongoing tropicalization of the northeastern Atlantic. Marine Biodiversity, 1-9.  

39. Gestoso, I., Cacabelos, E., Ramalhosa, P. & Canning-Clode, J. Plasticrusts: A new potential threat in the Anthropocene’s rocky shores. Science of The Total Environment 687, 413–415 (2019) 10.1016/j.scitotenv.2019.06.123  

38. Clark, J. B., Neale, P., Tzortziou, M., Cao, F. & Hood, R. R. A mechanistic model of photochemical transformation and degradation of colored dissolved organic matter. Marine Chemistry 103666 (2019). 10.1016/j.marchem.2019.103666 

37. Kauffman, J. B., Adame, M. F., Arifanti, V. B., Schile-Beers, L. M., Bernardino, A. F., Bhomia, R. K., ... & MacKenzie, R. A. (2020). Total ecosystem carbon stocks of mangroves across broad global environmental and physical gradients. Ecological Monographs, e01405.  

36. Johnson MD, Rodriguez Bravo LM, O’Connor SE, Varley NF and Altieri AH. 2019. pH Variability Exacerbates Effects of Ocean Acidification on a Caribbean Crustose Coralline Alga. Front. Mar. Sci. 6:150. doi: 10.3389/fmars. e00150. 

35. Brandl, S. J. et al. Demographic dynamics of the smallest marine vertebrates fuel coral reef ecosystem functioning. Science 364, 1189–1192 (2019). 

34. Duffy, J.E., Benedetti-Cecchi, L., Trinanes, J.A., Muller-Karger, F.E., Ambo-Rappe, R., Boström, C., Buschmann, A.H., Byrnes, J., Coles, R.G., Creed, J. and Cullen-Unsworth, L. 2019. Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science, 6, 317.  

33. Topor, ZM, Rasher, DB, Duffy, JE, Brandl, SJ. 2019. Marine protected areas enhance coral reef functioning by promoting fish biodiversity. Conservation Letters. e12638.  

32. Rogers, K., Kelleway, J.J., Saintilan, N., Megonigal, J.P., Adams, J.B., Holmquist, J.R., Lu, M., Schile-Beers, L., Zawadzki, A., Mazumder, D. and Woodroffe, C.D., 2019. Wetland carbon storage controlled by millennial-scale variation in relative sea-level rise. Nature, 567 (7746), p.91.  

31. Cheng, B. S., Altieri, A. H., Torchin, M. E., and Ruiz, G. M. 2019. Can marine reserves restore lost ecosystem functioning? A global synthesis. Ecology 100 (4): e02617.  

30. Janiak, D.S., R.W. Osman, C.J. Freeman, and V.J. Paul. 2018. Artificial structures versus mangrove prop roots: a general comparison of epifaunal communities within the Indian River Lagoon, Florida, USA. Marine Ecology Progress Series 607:85-98.  

27. Cheng, B.S., G.M. Ruiz, A.H. Altieri, and M.E. Torchin. 2018. The biogeography of invasion in tropical and temperate seagrass beds: Testing interactive effects of predation and propagule pressure. Diversity and Distributions 00:1-13. 

26. Brandl, S. J., C. H. R. Goatley, D. R. Bellwood, and L. Tornabene. 2018. The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs. Biological Reviews 0. 

25. Mueller, P., L. M. Schile-Beers, T. J. Mozdzer, G. L. Chmura, T. Dinter, Y. Kuzyakov, A. V de Groot, P. Esselink, C. Smit, A. D’Alpaos, C. Ibáñez, M. Lazarus, U. Neumeier, B. J. Johnson, A. H. Baldwin, S. A. Yarwood, D. I. Montemayor, Z. Yang, J. Wu, K. Jensen, and S. Nolte. 2018. Global-change effects on early-stage decomposition processes in tidal wetlands – implications from a global survey using standardized litter. Biogeosciences 15:3189–3202. 

24. Seemann, J., A. Yingst, R. D. Stuart-Smith, G. J. Edgar, and A. H. Altieri. 2018. The importance of sponges and mangroves in supporting fish communities on degraded coral reefs in Caribbean Panama. PeerJ 6:e4455. 

22. Campbell, J. E., A. H. Altieri, L. N. Johnston, C. D. Kuempel, R. Paperno, V. J. Paul, and J. E. Duffy. 2018. Herbivore community determines the magnitude and mechanism of nutrient effects on subtropical and tropical seagrasses. Journal of Ecology 106:401–412. 

21. Clark, J. B., W. Long, M. Tzortziou, P. J. Neale, and R. R. Hood. 2018. Wind-Driven Dissolved Organic Matter Dynamics in a Chesapeake Bay Tidal Marsh-Estuary System. Estuaries and Coasts 41:708–723. 

20. Nelson, N. G., R. Muñoz-Carpena, P. J. Neale, M. Tzortziou, and J. P. Megonigal. 2017. Temporal variability in the importance of hydrologic, biotic, and climatic descriptors of dissolved oxygen dynamics in a shallow tidal-marsh creek. Water Resources Research 53:7103–7120. 

19. Brandl, S. J., J. M. Casey, N. Knowlton, and J. E. Duffy. 2017. Marine dock pilings foster diverse, native cryptobenthic fish assemblages across bioregions. Ecology and Evolution 7:7069–7079. 

17. Duffy, J. E., C. M. Godwin, and B. J. Cardinale. 2017. Biodiversity effects in the wild are common and as strong as key drivers of productivity. Nature 549:261–264. 

16. Staaterman, E., M. Ogburn, A. Altieri, S. Brandl, R. Whippo, J. Seemann, M. Goodison, and J. Duffy. 2017. Bioacoustic measurements complement visual biodiversity surveys: preliminary evidence from four shallow marine habitats. Marine Ecology Progress Series 575:207–215. 

15. Hamilton, J. F., R. W. Osman, and I. C. Feller. 2017. Modeling local effects on propagule movement and the potential expansion of mangroves and associated fauna: testing in a sub-tropical lagoon. Hydrobiologia 803:173–187. 

14. Rodemann, J. R., and S. J. Brandl. 2017. Consumption pressure in coastal marine environments decreases with latitude and in artificial vs. natural habitats. Marine Ecology Progress Series 574:167–179. 

13. Leray, M., and N. Knowlton. 2017. Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding. PeerJ 5. 

12. Cramer, K. L., A. O’Dea, T. R. Clark, J. Zhao, and R. D. Norris. 2017. Prehistorical and historical declines in Caribbean coral reef accretion rates driven by loss of parrotfish. Nature Communications 8:14160. 

11. Lohan, K. M. P., R. C. Fleischer, M. E. Torchin, and G. M. Ruiz. 2017. Protistan Biogeography: A Snapshot Across a Major Shipping Corridor Spanning Two Oceans. Protist 168(2): 183-196.  

10. Janiak, D. S., J. N. Adams, B. Rubinoff, and R. W. Osman. 2017. Predator-Prey Interactions of the Polyclad, Euplana gracilis, and the Amphipod, Apocorophium lacustre, in the Chesapeake Bay. Estuaries and Coasts 40:513–521. 

9. Duffy, J. E., J. S. Lefcheck, R. D. Stuart-Smith, S. A. Navarrete, and G. J. Edgar. 2016. Biodiversity enhances reef fish biomass and resistance to climate change. Proceedings of the National Academy of Sciences 113:6230–6235. 

8. Altieri, A. H., S. B. Harrison, J. Seemann, R. Collin, R. J. Diaz, and N. Knowlton. 2017. Tropical dead zones and mass mortalities on coral reefs. Proceedings of the National Academy of Sciences 114:3660–3665. 

7. Lohan, K. M. P., K. M. Hill-Spanik, M. E. Torchin, L. Aguirre-Macedo, R. C. Fleischer, and G. M. Ruiz. 2016. Richness and distribution of tropical oyster parasites in two oceans. Parasitology 143:1119–1132. 

6. Duffy, J. E., S. L. Ziegler, J. E. Campbell, P. M. Bippus, and J. S. Lefcheck. 2015. Squidpops: A Simple Tool to Crowdsource a Global Map of Marine Predation Intensity. PLOS ONE 10:e0142994. 

5. Leray, M., Q. Haenel, and S. J. Bourlat. 2016. Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Adapter Ligation Method. Pages 209–218 Marine Genomics. Humana Press, New York, NY. 

4. Bourlat, S. J., Q. Haenel, J. Finnman, and M. Leray. 2016. Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR Method. Pages 197–207 Marine Genomics. Humana Press, New York, NY. 

3. Leray, M., and N. Knowlton. 2016. Visualizing Patterns of Marine Eukaryotic Diversity from Metabarcoding Data Using QIIME. Pages 219–235 Marine Genomics. Humana Press, New York, NY. 

2. Lohan, K. M. P., K. M. Hill-Spanik, M. E. Torchin, E. E. Strong, R. C. Fleischer, and G. M. Ruiz. 2015. Molecular phylogenetics reveals first record and invasion of Saccostrea species in the Caribbean. Marine Biology 162:957–968. 

1. Leray, M., and N. Knowlton. 2015. DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity. Proceedings of the National Academy of Sciences 112:2076–2081.